Zeng Research Group

Artificial Intelligence and Computational Biology
Laboratory

Jianyang ZENG,Ph.D.

Principle Investigator

zengjy@westlake.edu.cn

Jianyang (Michael) Zeng is a full professor in the School of Engineering, and an adjunct faculty member in the School of Life Sciences, Westlake University. He was a postdoctoral associate in the Department of Computer Science at Duke University and the Duke University School of Medicine in 2011-2012. He received his PhD in Computer Science from Duke University in 2011, advised by Prof. Bruce Donald (ACM and IEEE fellows). He received his MS and BS degrees from Zhejiang University in 2002 and 1999, respectively.

The research interests of the Zeng lab mainly focus on computational biology, machine learning and big data analysis, particularly the intersection between artificial intelligence/machine learning and life sciences. He has published over 80 papers in the prominent journals and conferences of computational biology and related fields, including top conferences ISMB and RECOMB, and prestigious journals, such as Nature (as a coauthor), Nature Machine Intelligence, Nature Communications, Nature Computational Science, Cell Systems, PNAS, Nucleic Acids Research, PLOS Computational Biology and Bioinformatics. He has been awarded "The XPLORER PRIZE" in 2023, "The National Science Fund for Distinguished Young Scholars in China" in 2021, "Wu Wenjun AI Science and Technology Award (Natural Science track, Third Prize)" in 2019, and "Top-10 Chinese Bioinformatics Breakthroughs" by Journal of Genomics, Proteomics and Bioinformatics in 2018 and 2019. He has been invited as a program committee (PC) member for prestigious international conferences in computational biology, including ISMB and RECOMB. He is an associate editor of IEEE/ACM Transactions on Computational Biology and Bioinformatics, and an advisory board member of Cell Systems.


Current Members

listed in alphabetical order of surnames

Li Chen

Research Assistant Professor

Shuangqin Li

Research Assistant Professor

Jian Zhang

Research Assistant Professor

Shuya Li

Postdoctorate

Zutan Li

Postdoctorate

Mengnan Jiang

Postdoctorate


 
Hongyu Dong

Ph.D. Student


Lei Hu

Ph.D. Student

dbinary.github.io

Xu Wang

Ph.D. Student


Zhirui Ye

Ph.D. Student


Wei Zhu

Ph.D. Student


Kai Chen

Visiting Student

Yipin Lei

Visiting Student

Huazhang Ying

Visiting Student

Hongyu Ji

Research Assistant

   
Shengfei Pan

Research Assistant

   
Zehua Tang

Research Assistant

   
Yihong Zheng

Research Assistant

Shichen Zhang

Research Assistant

Beining Shi

Administrative Assistant

Former Members

Former Research Assistant Professors
Name Year Current Position Current Affiliation Contact
 Peizhuo Wang  2023-2024  Associate Professor  Xidian University  
Former Postdoctoral Associates
Name Year Current Position Current Affiliation Contact
 Ahmed Abbas  2017-2019  Research Guest  The University of Texas at Dallas  
 Peizhuo Wang  2019-2022  Associate Professor  Xidian University  
Former Ph.D. Graduate Students
Name Year Current Position Current Affiliation Contact
Yaosen Min 2021-2023 Research Scientist Microsoft Research Asia  
Shuya Li 2019-2023 Potdoctoral Westlake University  
Tingzhong Tian 2017-2023 Research Scientist PuJiang Lab  
Rong Ma 2017-2023 Algorithm Engineer Silexon Ltd  
Hantao Shu 2018-2023 Algorithm Engineer Kuaishou Technology  
Xuan He 2018-2022 Potdoctoral University of Cambridge  
Peiyuan Feng 2016-2022 Algorithm Engineer Byte Dance Ltd  
Yuanpeng Xiong 2016-2022 Algorithm Engineer International Digital Economy Academy  
Fangping Wan 2015-2020 Potdoctoral University of Pennsylvania  
Hailin Hu 2016-2019 Algorithm Engineer Huawei Ltd  
Sai Zhang 2013-2017 Tenure-track Assistant Professor University of Florida  
Han Li 2019-2024 Lecturer Nankai University   
Former Master Graduate Students
Name Year Current Position Current Affiliation Contact
Rui Ma 2014-2017   Startup  
Jinglin Yang 2014-2017   Ministry of Industry and Information Technology  
Yanqing Zhang 2014-2017      
Huichao Gong 2013-2016 Quant Quantitative Investment Company  
Zhongjun Zhou 2013-2016   IT industry  
Xuan He 2015-2018 Obtained PhD Institute for Interdisciptrnary Information Sciences, Tsinghua University  
Shuya Li 2017-2019 Obtained PhD    
An Xiao 2016-2019 Algorithm Engineer Huawei Ltd.  
Lixiang Hong 2017-2020   Local goverment  
Peng Lang 2018-2021      
SLawrence Kurowski 2013-2017   Startup  
Feroz Karm 2019-2021   IT industry  
Meng Fang 2021-2024  PhD student Tsinghua University  
Former Undergraduate student
Name Year Current Position Current Affiliation Contact
Yan Hu 2019 PhD student Harvard University  
Banghua Zhu 2018 PhD student Computer Science, Stanford University  
Jitong Cai 2018 PhD student Computational Biology, JHU  
Fanghong Dong 2017 PhD student Computer Science, Princeton University  
Yifan Sun 2017 PhD student Computer Science, University of Texas at Austin  
Ruochi Zhang 2017 PhD student Computer Science, CMU  
Hongyu Zheng 2017 Potdoctoral Princeton University  
Yunan Luo 2016 Tenure-Track Assistant Professor School of Computational Science and Engineering, Georgia Institute of Technology  
Ge Liu 2014 Tenure-Track Assistant Professor Computer Science, UIUC  
Yichao Zhou 2014 PhD student EECS, University of California, Berkeley  
Yuexin Wu 2014 Graduate student Computer Science, CMU  
Siyu Wang 2014 PhD student Computational Biology and Bioinformatics, Duke University  
Mo Li 2014 PhD student Biostatistics, Yale University  
Yuhao Wang 2012-2013 Tenure-Track Assistant Professor IIIS, Tsinghua University  
Muxuan Liang 2012-2014 Tenure-Track Assistant Professor Biostatistics, University of Florida  
Fan Yang 2013 PhD student Department of Statistics, University of Chicago  
Haoyuan Zhang 2013-2014 PhD student Computer Science, University of Hong Kong  
Hao Chen 2016-2017 Tenure-Track Assistant Professor University of Illinois at Chicago  
Chang Liu 2023 PhD student Computer Science, CMU  
Shuo Hua 2023 Master student Stanford-Department of Biomedical Data Science  
Tianang Leng 2023-2024 PhD student University of Pennsylvania